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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1533
total RNA-seq
530
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
363
Transcription
84
DNA accessibility
Target of assay
3
control
Date released
129
February, 2021
113
August, 2021
56
May, 2022
48
July, 2018
47
September, 2023
43
April, 2018
40
September, 2020
19
April, 2020
16
January, 2021
5
December, 2019
3
August, 2018
3
February, 2023
3
July, 2019
3
June, 2018
3
May, 2023
1
August, 2022
1
November, 2018
1
September, 2018
Available data
207
tsv
155
fastq
100
bam
100
bigWig
98
txt
73
zippedFastqFolder
8
csv
1
bed bed3+
Organism
532
Homo sapiens
Biosample type
289
tissue
243
primary cell
2
in vitro differentiated cells
Organ
93
heart
85
pancreas
84
bone element
72
kidney
71
epithelium
19
lung
8
blood
8
bodily fluid
6
blood vessel
6
vasculature
5
connective tissue
3
brain
2
artery
2
musculature of body
1
adipose tissue
1
liver
Project
317
AMP
133
HPAP
47
KPMP
19
LungMap
18
T1D
Genome assembly (visualization)
101
hg19
100
GRCh38
Lab
300
AMP-T2D consortium
133
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
18
Kyle Gaulton, UCSD
17
Katalin Susztak, Upenn
Audit category:
93
inconsistent ontology term
38
audit script error
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
534 results
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single cell RNA-seq
RNA microarray
snATAC-seq
tissue
bone element
84
kidney
64
6
lung
9
10
heart left ventricle
18
left cardiac atrium
18
+ See 19 more…
primary cell
Langerhans cell
85
48
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 15 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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