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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
2
ATAC-seq
1
DNase-seq
Assay category
120
DNA binding
31
Transcription
6
DNA methylation
3
3D chromatin structure
3
DNA accessibility
1
DNA sequencing
Date released
1
August, 2017
1
February, 2021
1
October, 2019
Available data
28
bed narrowPeak
bigWig
8
bam
6
bigBed narrowPeak
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
4
fastq
1
bed bed3
Organism
3
Homo sapiens
Biosample type
1
cell line
1
primary cell
1
tissue
Organ
122
pancreas
83
kidney
71
epithelium
43
artery
43
blood vessel
43
heart
43
vasculature
28
eye
16
connective tissue
12
bone element
12
skeleton
10
lung
8
blood
8
bodily fluid
6
limb
3
liver
2
adipose tissue
2
brain
1
musculature of body
1
pituitary gland
1
skin of body
Project
3
AMP
Genome assembly (visualization)
2
GRCh38
2
hg19
Lab
3
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
lab.title!
Stephen Parker, UMich
files.file_type!
bigWig
BIOSAMPLE
ASSAY
3 results
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ATAC-seq
DNase-seq
cell line
HepG2
1
primary cell
Liver fetal (hepatocyte)
1
tissue
right lobe of liver
1
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