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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
17
ChIP-seq
6
Hi-C
6
total RNA-seq
2
small RNA-seq
1
RRBS
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
17
DNA binding
9
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
3
control
Date released
43
June, 2019
August, 2017
10
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
January, 2018
Available data
57
bam
54
bigWig
47
bed narrowPeak
47
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
9
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
txt
Organism
69
Homo sapiens
Biosample type
55
tissue
14
primary cell
Organ
757
pancreas
737
liver
558
connective tissue
495
epithelium
433
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
69
musculature of body
68
blood
68
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
69
AMP
Genome assembly (visualization)
57
hg19
53
GRCh38
Lab
69
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
lab.title!
Stephen Parker, UMich
month_released!
January, 2018
August, 2017
BIOSAMPLE
ASSAY
69 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
small RNA-seq
RRBS
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
skeletal muscle tissue
1
1
1
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
1
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