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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ATAC-seq
183
single cell RNA-seq
182
total RNA-seq
146
ChIP-seq
56
snATAC-seq
47
WGBS
25
DNase-seq
9
Hi-C
9
RRBS
1
FAIRE-seq
1
small RNA-seq
Assay category
366
Transcription
267
DNA accessibility
146
DNA binding
56
DNA methylation
9
3D chromatin structure
Target of assay
111
histone
111
histone modification
59
narrow histone mark
52
broad histone mark
29
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
46
July, 2018
45
February, 2021
41
April, 2018
38
June, 2019
34
October, 2019
23
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
424
bam
410
bigWig
406
fastq
203
tsv
153
zippedFastqFolder
151
bed narrowPeak
94
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
27
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
844
Homo sapiens
Biosample type
2189
tissue
844
primary cell
641
cell line
166
in vitro differentiated cells
9
stem cell
Organ
406
epithelium
346
pancreas
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
466
AMP
324
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
410
hg19
355
GRCh38
Lab
466
AMP-T2D consortium
324
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
40
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Stephen Parker, UMich
month_released!
May, 2021
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
844 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
FAIRE-seq
small RNA-seq
primary cell
pancreatic alpha cell
35
12
52
13
31
1
Langerhans cell
85
48
pancreatic beta cell
23
12
21
13
16
1
exocrine cell
39
pancreatic acinar cell
9
12
4
8
1
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