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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
7
ATAC-seq
1
Hi-C
1
total RNA-seq
Assay category
17
DNA binding
7
DNA accessibility
1
3D chromatin structure
1
Transcription
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
4
control
1
RNA binding protein
1
transcription factor
Date released
128
February, 2021
90
May, 2021
26
June, 2019
23
October, 2019
22
November, 2019
17
March, 2020
11
February, 2023
8
May, 2020
6
July, 2018
6
November, 2020
4
December, 2017
3
August, 2021
3
May, 2019
2
December, 2019
2
July, 2019
1
February, 2020
1
June, 2018
Available data
25
bam
20
bed narrowPeak
14
bigWig
4
fastq
1
bedpe bed3+
1
hic
1
tsv
Organism
26
Homo sapiens
Biosample type
16
cell line
9
in vitro differentiated cells
1
tissue
Organ
20
epithelium
16
pancreas
4
embryo
1
adipose tissue
1
connective tissue
Project
26
AMP
Genome assembly (visualization)
22
hg19
21
GRCh38
Lab
26
AMP-T2D consortium
Audit category:
27
inconsistent control
26
inconsistent ontology term
Audit category:
1
inconsistent control read length
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
cell line
EndoC_BH1
13
1
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
Hepatic endoderm
4
tissue
adipose tissue(adipose white tissue)
1
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