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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
total RNA-seq
53
ATAC-seq
48
snATAC-seq
47
WGBS
45
single cell RNA-seq
8
ChIP-seq
2
pCHi-C
Assay category
146
Transcription
101
DNA accessibility
47
DNA methylation
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
134
zippedFastqFolder
120
bam
107
bigWig
107
tsv
45
fastq
15
bed narrowPeak
8
tagAlign
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
304
Homo sapiens
Biosample type
tissue
182
primary cell
96
cell line
26
in vitro differentiated cells
Organ
112
epithelium
112
pancreas
66
artery
66
blood vessel
66
heart
66
vasculature
11
connective tissue
2
liver
Project
179
HPAP
125
AMP
Genome assembly (visualization)
122
hg19
116
GRCh38
Lab
179
Klaus Kaestner, Upenn
125
AMP-T2D consortium
Audit category:
44
inconsistent ontology term
27
audit script error
1
inconsistent replicate
lab.title!
Stephen Parker, UMich
biosample_type!
tissue
BIOSAMPLE
ASSAY
304 results
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Clear Filters
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
single cell RNA-seq
ChIP-seq
pCHi-C
primary cell
Langerhans cell
48
45
pancreatic alpha cell
22
31
pancreatic beta cell
13
16
pancreatic acinar cell
4
osteoblast
1
1
1
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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