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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
ChIP-seq
Assay category
396
DNA binding
Target of assay
235
transcription factor
87
histone
87
histone modification
71
control
66
recombinant protein
50
broad histone mark
37
narrow histone mark
35
RNA binding protein
11
chromatin remodeller
2
other context
2
other post-translational modification
Date released
649
February, 2021
396
May, 2021
396
November, 2017
372
August, 2017
341
May, 2020
306
October, 2019
227
August, 2021
200
May, 2022
183
June, 2019
169
February, 2023
168
July, 2018
99
May, 2019
93
December, 2017
85
November, 2018
83
July, 2019
76
October, 2018
61
November, 2019
59
September, 2020
57
March, 2020
49
April, 2018
47
September, 2023
41
September, 2018
39
February, 2018
35
December, 2018
30
January, 2019
23
April, 2019
22
February, 2020
19
April, 2020
18
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
382
bam
324
bigWig
314
fastq
303
bed narrowPeak
302
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
396
Homo sapiens
Biosample type
305
cell line
82
tissue
9
primary cell
Organ
305
liver
91
brain
6
epithelium
6
vasculature
3
blood vessel
Project
396
AMP
Genome assembly (visualization)
277
GRCh38
271
hg19
Lab
396
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
18
inconsistent control read length
lab.title!
Stephen Parker, UMich
organ_slims!
heart
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
396 results
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Clear Filters
ChIP-seq
cell line
HepG2
305
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 1 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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