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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ATAC-seq
82
total RNA-seq
67
single cell RNA-seq
40
ChIP-seq
26
snATAC-seq
4
MeRIP-seq
3
Hi-C
Assay category
154
DNA accessibility
149
Transcription
40
DNA binding
3
3D chromatin structure
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
5
RNA binding protein
5
transcription factor
2
control
2
nucleotide modification
Date released
130
August, 2021
64
May, 2022
47
September, 2023
40
May, 2024
19
April, 2020
18
February, 2023
14
May, 2023
8
January, 2021
5
March, 2019
4
November, 2020
1
May, 2021
Available data
142
bed narrowPeak
64
xls
63
txt
60
bigWig
25
bam
25
fastq
2
hic
1
bed broadPeak
1
bedpe
1
bedpe bed3+
1
tsv
Organism
349
Homo sapiens
Biosample type
564
primary cell
350
tissue
54
in vitro differentiated cells
47
cell line
2
stem cell
Organ
189
kidney
62
pancreas
40
heart
40
liver
19
lung
thymus
Project
258
AMP
47
KPMP
26
T1D
19
LungMap
Genome assembly (visualization)
117
GRCh38
42
hg19
Lab
AMP-T2D consortium
142
Katalin Susztak, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Stephen Parker, UMich
lab.title!
Stephen Parker, UMich
AMP-T2D consortium
organ_slims!
thymus
BIOSAMPLE
ASSAY
350 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
MeRIP-seq
Hi-C
tissue
kidney
75
49
58
6
1
islet of Langerhans
33
12
6
4
2
left cardiac atrium
40
liver
20
20
lung
9
10
pancreas
1
4
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