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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
492
ChIP-seq
189
total RNA-seq
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
492
DNA binding
193
Transcription
7
DNA methylation
6
DNA accessibility
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
308
November, 2017
167
May, 2020
56
December, 2017
53
November, 2018
40
August, 2017
31
August, 2021
20
May, 2022
10
July, 2019
5
December, 2019
5
January, 2019
4
October, 2019
3
March, 2020
2
February, 2021
2
June, 2019
1
December, 2018
1
February, 2020
Available data
628
bam
549
bigWig
445
fastq
367
bed narrowPeak
343
bigBed narrowPeak
174
tsv
57
bed broadPeak
57
bigBed broadPeak
46
tagAlign
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
708
Homo sapiens
Biosample type
391
cell line
296
tissue
11
primary cell
10
in vitro differentiated cells
Organ
721
pancreas
708
liver
626
connective tissue
473
adipose tissue
372
epithelium
306
heart
264
kidney
165
brain
164
vasculature
159
blood vessel
147
bone element
99
limb
90
artery
82
musculature of body
67
blood
67
bodily fluid
34
nerve
30
eye
29
embryo
22
spleen
20
lung
18
ureter
16
vein
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
708
AMP
Genome assembly (visualization)
550
hg19
487
GRCh38
Lab
659
AMP-T2D consortium
29
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
lab.title!
Stephen Parker, UMich
target.investigated_as!
narrow histone mark
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
708 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
369
14
1
2
2
2
1
tissue
liver
103
167
2
3
1
1
1
1
1
right lobe of liver
8
3
2
1
2
primary cell
hepatocyte
2
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
10
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