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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
Assay category
60
DNA binding
Target of assay
94
histone
94
histone modification
60
transcription factor
50
narrow histone mark
44
broad histone mark
36
control
18
RNA binding protein
11
chromatin remodeller
3
nucleotide modification
Date released
25
December, 2018
14
January, 2019
12
November, 2018
2
December, 2017
2
June, 2019
2
November, 2017
1
May, 2019
1
May, 2021
1
November, 2019
Available data
60
bam
60
bed narrowPeak
60
bigWig
58
bigBed narrowPeak
55
fastq
2
bed broadPeak
2
bigBed broadPeak
1
tagAlign
Organism
60
Homo sapiens
Biosample type
52
cell line
5
primary cell
3
in vitro differentiated cells
Organ
338
liver
51
blood
51
bodily fluid
40
connective tissue
19
pancreas
17
adipose tissue
17
heart
10
kidney
9
epithelium
9
vasculature
8
blood vessel
6
spleen
5
artery
3
brain
3
embryo
1
eye
Project
60
AMP
Genome assembly (visualization)
60
GRCh38
60
hg19
Lab
60
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
inconsistent control
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
60 results
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ChIP-seq
cell line
GM12878
51
EndoC_BH1
1
primary cell
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
kidney epithelial cell
1
retinal pigment epithelial cell
1
in vitro differentiated cells
hepatocyte
2
pancreatic PP cell
1
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