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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
355
ChIP-seq
Assay category
355
DNA binding
Target of assay
355
transcription factor
200
histone modification
199
histone
128
control
100
narrow histone mark
99
broad histone mark
82
recombinant protein
69
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
241
November, 2017
49
November, 2018
33
December, 2017
11
August, 2021
5
April, 2019
5
May, 2024
4
August, 2017
4
February, 2021
2
May, 2019
1
June, 2019
Available data
350
bigWig
346
bed narrowPeak
338
bam
327
fastq
322
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
4
tagAlign
3
tar
2
bed bed3+
Organism
355
Homo sapiens
Biosample type
301
cell line
51
tissue
2
in vitro differentiated cells
1
primary cell
Organ
338
liver
51
blood
51
bodily fluid
40
connective tissue
19
pancreas
17
adipose tissue
17
heart
10
kidney
9
epithelium
9
vasculature
8
blood vessel
6
spleen
5
artery
3
brain
3
embryo
1
eye
Project
355
AMP
Genome assembly (visualization)
341
hg19
303
GRCh38
Lab
339
AMP-T2D consortium
11
Bing Ren, UCSD
5
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
355 results
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Clear Filters
ChIP-seq
cell line
HepG2
297
smooth muscle cell of the coronary artery
4
tissue
liver
37
heart left ventricle
5
left cardiac atrium
5
right lobe of liver
2
coronary artery
1
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in vitro differentiated cells
hepatocyte
2
primary cell
cardiac fibroblast
1
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