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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ATAC-seq
74
total RNA-seq
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
80
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Date released
707
February, 2021
291
May, 2020
272
August, 2021
234
May, 2021
202
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
123
tsv
74
bed narrowPeak
64
xls
57
txt
25
bam
15
bigWig
2
bedpe bed3+
2
hic
1
vcf
Organism
271
Homo sapiens
Biosample type
229
tissue
26
cell line
17
in vitro differentiated cells
Organ
130
kidney
92
heart
13
liver
8
embryo
6
blood vessel
6
vasculature
4
pancreas
2
artery
2
epithelium
1
adipose tissue
1
connective tissue
Project
272
AMP
Genome assembly (visualization)
89
GRCh38
27
hg19
Lab
128
Katalin Susztak, Upenn
126
AMP-T2D consortium
18
Bing Ren, UCSD
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
lab.title!
Struan F.A. Grant, CHOP
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
272 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
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