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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
15
ATAC-seq
9
total RNA-seq
DNase-seq
1
pCHi-C
Assay category
67
DNA binding
15
DNA accessibility
9
Transcription
Target of assay
37
histone
37
histone modification
22
transcription factor
20
broad histone mark
16
narrow histone mark
8
control
4
RNA binding protein
2
chromatin remodeller
Date released
67
August, 2017
13
February, 2023
8
February, 2021
2
October, 2019
1
August, 2018
1
May, 2021
Available data
58
bam
54
bigWig
54
fastq
42
bed narrowPeak
14
tagAlign
11
bed bed3+
5
bed bed3
5
tsv
4
bed bedgraph
2
bigBed narrowPeak
1
bedpe bed3+
Organism
92
Homo sapiens
Biosample type
545
tissue
92
in vitro differentiated cells
33
primary cell
1
stem cell
Organ
92
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
92
AMP
Genome assembly (visualization)
68
hg19
53
GRCh38
Lab
92
AMP-T2D consortium
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
lab.title!
Struan F.A. Grant, CHOP
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
92 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
in vitro differentiated cells
adipocyte
67
7
5
chondrocyte
5
immature adipocyte
2
2
preadipocyte
1
1
cardiac fibroblast
1
white fat cell
1
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