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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
1
DNA accessibility
Date released
89
February, 2021
57
August, 2021
7
May, 2022
4
February, 2023
1
October, 2022
Available data
3183
bam
2955
bigWig
1604
bed narrowPeak
1599
tsv
1346
fastq
833
bigBed narrowPeak
398
tagAlign
158
txt
153
zippedFastqFolder
116
bed broadPeak
79
bigBed broadPeak
67
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
5
hdf5
4
bed bedgraph
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
157
Homo sapiens
Biosample type
157
tissue
1
cell line
Organ
88
bone element
62
kidney
6
pancreas
4
skeleton
1
musculature of body
Project
158
AMP
Genome assembly (visualization)
1
hg19
Lab
95
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Struan F.A. Grant, CHOP
Audit category:
84
inconsistent ontology term
6
audit script error
lab.title!
Struan F.A. Grant, CHOP
assay_title!
DNase-seq
organ_slims!
large intestine
BIOSAMPLE
ASSAY
158 results
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RNA microarray
total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
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cell line
MIN6
1
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