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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
66
ATAC-seq
5
FAIRE-seq
2
DNase-seq
Assay category
108
DNA binding
73
DNA accessibility
Target of assay
64
histone
64
histone modification
44
transcription factor
33
broad histone mark
31
narrow histone mark
6
RNA binding protein
2
chromatin remodeller
Date released
38
May, 2022
33
November, 2017
30
May, 2021
28
February, 2023
24
August, 2017
14
August, 2021
8
May, 2020
2
July, 2019
1
April, 2019
1
May, 2019
1
November, 2018
1
October, 2019
Available data
433
bam
407
fastq
234
bigWig
200
tsv
181
bed narrowPeak
158
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
13
bed bed3+
10
bed bed3
8
csv
4
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
181
Homo sapiens
Biosample type
101
tissue
46
cell line
34
primary cell
Organ
74
liver
27
eye
26
pancreas
14
musculature of body
13
epithelium
2
adipose tissue
2
brain
2
connective tissue
1
blood vessel
1
heart
1
kidney
1
limb
1
vasculature
1
vein
Project
181
AMP
Genome assembly (visualization)
1594
hg19
GRCh38
Lab
99
AMP-T2D consortium
48
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Struan F.A. Grant, CHOP
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
lab.title!
Struan F.A. Grant, CHOP
assembly!
GRCh38
BIOSAMPLE
ASSAY
181 results
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ChIP-seq
ATAC-seq
FAIRE-seq
DNase-seq
tissue
liver
8
20
islet of Langerhans
6
18
1
retina
15
skeletal muscle tissue
13
pigmented layer of retina
12
+ See 8 more…
cell line
HepG2
46
primary cell
CD8-positive, alpha-beta T cell
30
skeletal muscle myoblast
1
2
endothelial cell of umbilical vein
1
See all biosamples
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