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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
DNase-seq
58
ChIP-seq
Assay category
194
DNA accessibility
58
DNA binding
Target of assay
34
transcription factor
24
histone
24
histone modification
13
broad histone mark
11
narrow histone mark
5
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
180
June, 2019
46
November, 2017
13
August, 2017
9
November, 2018
3
October, 2019
1
November, 2020
Available data
2803
bam
2782
bigWig
1500
bed narrowPeak
1342
tsv
947
fastq
916
bigBed narrowPeak
267
bed broadPeak
252
bigBed broadPeak
247
bed bed3+
242
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
252
Homo sapiens
Biosample type
171
tissue
45
cell line
35
primary cell
1
in vitro differentiated cells
Organ
78
kidney
49
liver
38
brain
36
limb
33
musculature of body
30
heart
20
epithelium
18
ureter
vasculature
11
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
252
AMP
Genome assembly (visualization)
252
GRCh38
246
hg19
Lab
252
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
11
inconsistent control read length
1
inconsistent assembly
lab.title!
Struan F.A. Grant, CHOP
organ_slims!
vasculature
BIOSAMPLE
ASSAY
252 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
cell line
HepG2
44
Panc1
1
primary cell
skeletal muscle myoblast
12
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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