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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
14
total RNA-seq
2
DNase-seq
Assay category
25
DNA binding
14
Transcription
2
DNA accessibility
Target of assay
21
histone
21
histone modification
12
narrow histone mark
9
broad histone mark
3
transcription factor
1
control
Date released
12
October, 2019
10
February, 2018
9
December, 2017
8
August, 2021
2
May, 2021
Available data
41
bam
40
bigWig
26
bed narrowPeak
19
fastq
14
tsv
12
bigBed narrowPeak
5
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
41
Homo sapiens
Biosample type
21
in vitro differentiated cells
12
primary cell
8
cell line
Organ
635
pancreas
566
connective tissue
531
liver
424
adipose tissue
294
epithelium
266
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
41
AMP
Genome assembly (visualization)
46
hg19
41
GRCh38
1
hg18
Lab
41
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
3
inconsistent control read length
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
total RNA-seq
DNase-seq
in vitro differentiated cells
pancreatic endoderm
13
4
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
endothelial cell of umbilical vein
10
2
cell line
H1-hESC
8
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