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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1812
ChIP-seq
1397
total RNA-seq
485
ATAC-seq
360
single cell RNA-seq
208
DNase-seq
84
snATAC-seq
75
WGBS
48
pCHi-C
29
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
360
Transcription
19
DNA methylation
Target of assay
3
control
Date released
106
August, 2021
49
April, 2018
47
September, 2023
42
July, 2018
40
September, 2020
34
May, 2022
18
February, 2021
16
July, 2019
9
April, 2020
6
August, 2017
3
August, 2018
3
May, 2023
2
June, 2018
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
202
tsv
131
fastq
99
bam
99
bigWig
52
zippedFastqFolder
17
bed bedMethyl
17
bigBed bedMethyl
13
txt
8
csv
Organism
379
Homo sapiens
Biosample type
191
tissue
188
primary cell
Organ
94
heart
77
pancreas
74
epithelium
67
kidney
9
lung
7
vasculature
6
blood vessel
6
musculature of body
5
brain
4
connective tissue
3
liver
2
artery
1
eye
1
pericardium
Project
238
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
116
hg19
99
GRCh38
Lab
227
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
inconsistent ontology term
7
audit script error
lab.title!
Struan F.A. Grant, CHOP
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
379 results
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Clear Filters
single cell RNA-seq
RRBS
tissue
kidney
64
1
heart left ventricle
18
1
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 17 more…
primary cell
Langerhans cell
85
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic acinar cell
11
pancreatic delta cell
11
+ See 19 more…
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