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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
326
ChIP-seq
68
total RNA-seq
9
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
326
DNA binding
68
Transcription
11
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
301
transcription factor
81
recombinant protein
57
RNA binding protein
28
chromatin remodeller
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
66
February, 2021
57
November, 2018
27
December, 2018
20
January, 2019
10
October, 2019
8
August, 2021
2
March, 2020
Available data
406
bam
398
bigWig
337
bed narrowPeak
323
bigBed narrowPeak
321
fastq
68
tsv
45
bed broadPeak
45
bigBed broadPeak
14
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
407
Homo sapiens
Biosample type
1855
tissue
500
primary cell
407
cell line
166
in vitro differentiated cells
3
stem cell
Organ
268
liver
64
artery
64
blood vessel
64
heart
64
vasculature
54
blood
54
bodily fluid
8
embryo
8
pancreas
2
epithelium
2
kidney
Project
407
AMP
Genome assembly (visualization)
470
hg19
407
GRCh38
Lab
407
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
lab.title!
Struan F.A. Grant, CHOP
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
407 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
261
5
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
H1-hESC
8
Panc1
6
1
1
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