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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
total RNA-seq
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
66
Transcription
1
DNA accessibility
Date released
57
August, 2021
5
February, 2021
4
February, 2023
1
May, 2022
1
October, 2022
Available data
2545
bam
2403
bigWig
1551
bed narrowPeak
1072
tsv
927
bigBed narrowPeak
881
fastq
376
tagAlign
297
bed broadPeak
274
bigBed broadPeak
236
bed bed3+
73
zippedFastqFolder
68
txt
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
12
bed bed3
12
hic
10
bedpe bed3+
8
csv
4
bed bedgraph
4
hdf5
4
tar
1
tagAlign bed3+
1
vcf
Organism
67
Homo sapiens
Biosample type
67
tissue
1
cell line
Organ
62
kidney
pancreas
4
bone element
4
skeleton
1
musculature of body
Project
68
AMP
Genome assembly (visualization)
1
hg19
Lab
57
Katalin Susztak, Upenn
11
AMP-T2D consortium
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
6
audit script error
lab.title!
Struan F.A. Grant, CHOP
audit.ERROR.category!
inconsistent ontology term
organ_slims!
pancreas
BIOSAMPLE
ASSAY
68 results
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total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
kidney
49
13
acetabular part of hip bone
1
ilium
1
ischium
1
pubis
1
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cell line
MIN6
1
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