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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
DNase-seq
4
ATAC-seq
1
Hi-C
1
pCHi-C
1
snATAC-seq
Assay category
173
DNA accessibility
1
3D chromatin structure
Date released
163
June, 2019
6
October, 2019
4
February, 2023
1
February, 2021
1
May, 2022
Available data
2783
bam
2551
bigWig
1518
bed narrowPeak
1330
tsv
fastq
933
bigBed narrowPeak
298
tagAlign
273
bed broadPeak
236
bigBed broadPeak
234
bed bed3+
158
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
6
csv
4
bed bedgraph
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
175
Homo sapiens
Biosample type
168
tissue
primary cell
4
in vitro differentiated cells
3
cell line
Organ
68
kidney
36
limb
33
musculature of body
27
heart
25
brain
18
ureter
6
pancreas
5
blood vessel
5
connective tissue
5
vasculature
4
artery
3
eye
2
nerve
1
adipose tissue
1
liver
Project
175
AMP
Genome assembly (visualization)
169
GRCh38
159
hg19
Lab
175
AMP-T2D consortium
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
lab.title!
Struan F.A. Grant, CHOP
biosample_type!
primary cell
files.file_type!
fastq
BIOSAMPLE
ASSAY
175 results
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Clear Filters
DNase-seq
ATAC-seq
Hi-C
pCHi-C
snATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 37 more…
in vitro differentiated cells
immature adipocyte
2
adipocyte
1
preadipocyte
1
cell line
Panc1
1
1
HepG2
1
See all biosamples
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