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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ATAC-seq
17
total RNA-seq
10
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
98
DNA accessibility
18
Transcription
Date released
667
February, 2021
397
November, 2017
352
August, 2017
311
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
115
May, 2019
114
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
63
bed narrowPeak
10
bed bed3
4
bed bed3+
4
tsv
4
txt
Organism
121
Homo sapiens
Biosample type
103
tissue
primary cell
13
in vitro differentiated cells
6
cell line
Organ
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
27
pancreas
15
epithelium
14
connective tissue
8
bone element
8
skeleton
1
adipose tissue
1
brain
Project
91
AMP
31
T1D
Genome assembly (visualization)
42
hg19
35
GRCh38
Lab
91
AMP-T2D consortium
31
Kyle Gaulton, UCSD
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
lab.title!
Struan F.A. Grant, CHOP
biosample_type!
primary cell
BIOSAMPLE
ASSAY
122 results
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Clear Filters
ATAC-seq
total RNA-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
coronary artery
35
islet of Langerhans
11
5
6
retina
15
2
pigmented layer of retina
12
2
pancreas
4
+ See 7 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
cell line
EndoC_BH1
3
2
1
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