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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
685
ChIP-seq
172
DNase-seq
5
ATAC-seq
2
FAIRE-seq
Assay category
685
DNA binding
179
DNA accessibility
Target of assay
385
transcription factor
295
histone
295
histone modification
191
broad histone mark
104
narrow histone mark
81
recombinant protein
77
RNA binding protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
306
November, 2017
159
June, 2019
92
May, 2019
70
November, 2018
64
April, 2019
50
December, 2017
50
October, 2019
30
December, 2018
21
January, 2019
9
August, 2017
6
October, 2017
5
October, 2018
2
July, 2019
Available data
2288
bam
2120
bigWig
1372
bed narrowPeak
1021
tsv
864
bigBed narrowPeak
736
fastq
279
tagAlign
252
bed broadPeak
229
bigBed broadPeak
205
bed bed3+
152
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
15
bedpe bed3+
13
hic
11
bed bed3
6
csv
4
bed bedgraph
3
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
864
Homo sapiens
Biosample type
499
tissue
348
cell line
primary cell
17
in vitro differentiated cells
Organ
356
liver
116
brain
88
heart
88
kidney
84
limb
pancreas
62
blood vessel
62
vasculature
54
blood
54
bodily fluid
38
musculature of body
26
nerve
25
artery
18
ureter
15
epithelium
13
connective tissue
13
spleen
10
adipose tissue
3
eye
Project
864
AMP
Genome assembly (visualization)
826
GRCh38
794
hg19
Lab
864
AMP-T2D consortium
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
lab.title!
Struan F.A. Grant, CHOP
biosample_type!
primary cell
organ_slims!
pancreas
BIOSAMPLE
ASSAY
864 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
tibial nerve
24
2
heart
7
18
+ See 49 more…
cell line
HepG2
293
GM12878
54
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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