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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
686
ChIP-seq
20
total RNA-seq
8
DNase-seq
7
WGBS
5
ATAC-seq
5
GRO-seq
3
RRBS
1
Hi-C
1
pCHi-C
Assay category
686
DNA binding
20
Transcription
13
DNA accessibility
10
DNA methylation
1
3D chromatin structure
Target of assay
432
transcription factor
134
control
115
histone modification
114
histone
82
recombinant protein
76
RNA binding protein
60
broad histone mark
53
narrow histone mark
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
315
November, 2017
102
August, 2017
94
December, 2017
80
November, 2018
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2018
12
October, 2017
5
January, 2018
1
August, 2018
Available data
2288
bam
2120
bigWig
1372
bed narrowPeak
1021
tsv
864
bigBed narrowPeak
736
fastq
279
tagAlign
252
bed broadPeak
229
bigBed broadPeak
205
bed bed3+
152
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
15
bedpe bed3+
13
hic
11
bed bed3
6
csv
4
bed bedgraph
3
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
736
Homo sapiens
Biosample type
427
cell line
164
tissue
primary cell
141
in vitro differentiated cells
4
stem cell
Organ
465
liver
pancreas
98
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
19
epithelium
12
brain
2
musculature of body
Project
736
AMP
Genome assembly (visualization)
596
hg19
552
GRCh38
5
hg18
Lab
736
AMP-T2D consortium
Audit category:
28
inconsistent control
4
inconsistent ontology term
Audit category:
35
missing controlled_by
Audit category:
46
inconsistent control read length
8
inconsistent control run_type
lab.title!
Struan F.A. Grant, CHOP
biosample_type!
primary cell
organ_slims!
pancreas
BIOSAMPLE
ASSAY
736 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
ATAC-seq
GRO-seq
RRBS
Hi-C
pCHi-C
cell line
HepG2
360
5
1
1
GM12878
60
tissue
liver
67
2
1
1
spleen
20
1
2
1
omental fat pad
11
1
1
subcutaneous adipose tissue
12
1
right lobe of liver
10
1
1
+ See 5 more…
in vitro differentiated cells
adipocyte
53
1
pancreatic endoderm
18
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
+ See 7 more…
stem cell
hESC
3
1
See all biosamples
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