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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ChIP-seq
9
WGBS
5
RRBS
2
ATAC-seq
2
DNase-seq
Assay category
187
DNA binding
14
DNA methylation
4
DNA accessibility
Target of assay
121
histone modification
120
histone
71
broad histone mark
48
narrow histone mark
38
transcription factor
28
control
4
RNA binding protein
2
chromatin remodeller
Date released
641
February, 2021
397
November, 2017
307
August, 2021
262
October, 2019
205
August, 2017
194
May, 2020
159
June, 2019
132
May, 2021
113
May, 2019
95
February, 2023
94
December, 2017
80
April, 2019
80
November, 2018
71
July, 2019
49
March, 2020
47
September, 2023
42
May, 2022
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
8
January, 2018
6
November, 2019
5
December, 2019
4
March, 2023
1
August, 2018
1
October, 2022
Available data
102
fastq
97
bam
96
bigWig
77
bed narrowPeak
57
tagAlign
15
bed broadPeak
14
bed bed3+
9
bigBed narrowPeak
5
bed bedMethyl
5
bigBed bedMethyl
1
bigBed broadPeak
Organism
205
Homo sapiens
Biosample type
137
tissue
68
in vitro differentiated cells
primary cell
Organ
pancreas
125
connective tissue
57
adipose tissue
54
liver
26
musculature of body
Project
205
AMP
Genome assembly (visualization)
99
hg19
84
GRCh38
Lab
205
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
7
inconsistent control read length
lab.title!
Struan F.A. Grant, CHOP
biosample_type!
primary cell
organ_slims!
pancreas
BIOSAMPLE
ASSAY
205 results
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Clear Filters
ChIP-seq
WGBS
RRBS
ATAC-seq
DNase-seq
tissue
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
white adipose tissue
12
adipose tissue
2
3
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in vitro differentiated cells
adipocyte
67
1
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