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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
46
ATAC-seq
5
DNase-seq
2
WGBS
1
Hi-C
Assay category
79
DNA binding
51
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
50
May, 2019
35
February, 2023
26
October, 2019
14
February, 2021
4
July, 2019
3
June, 2019
1
March, 2020
Available data
153
bam
126
bigWig
112
bed narrowPeak
tsv
62
bigBed narrowPeak
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
133
Homo sapiens
Biosample type
119
tissue
primary cell
14
cell line
Organ
608
liver
300
kidney
291
pancreas
242
brain
216
heart
178
connective tissue
133
blood vessel
133
vasculature
115
limb
100
bone element
90
adipose tissue
83
artery
78
epithelium
75
musculature of body
61
blood
61
bodily fluid
51
eye
38
nerve
24
spleen
23
embryo
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
133
AMP
Genome assembly (visualization)
113
GRCh38
78
hg19
Lab
133
AMP-T2D consortium
lab.title!
Struan F.A. Grant, CHOP
biosample_type!
primary cell
files.file_type!
tsv
BIOSAMPLE
ASSAY
133 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
tissue
coronary artery
5
36
2
tibial artery
23
1
2
ascending aorta
16
1
thoracic aorta
16
1
aorta
13
2
1
cell line
smooth muscle cell of the coronary artery
6
8
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