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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
6
single cell RNA-seq
6
total RNA-seq
3
DNase-seq
2
ATAC-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
68
DNA binding
12
Transcription
5
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
52
histone
52
histone modification
36
broad histone mark
16
narrow histone mark
14
control
2
RNA binding protein
2
transcription factor
Date released
45
May, 2019
26
October, 2019
6
August, 2021
6
July, 2019
3
March, 2020
2
February, 2020
1
June, 2019
Available data
79
bam
64
bigWig
59
bed narrowPeak
57
bigBed narrowPeak
13
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
89
Homo sapiens
Biosample type
89
tissue
primary cell
Organ
777
liver
641
connective tissue
600
pancreas
489
adipose tissue
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
89
AMP
Genome assembly (visualization)
64
GRCh38
64
hg19
Lab
89
AMP-T2D consortium
lab.title!
Struan F.A. Grant, CHOP
biosample_type!
primary cell
organ_slims!
heart
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
tissue
tibial artery
23
1
2
1
aorta
13
4
1
2
1
1
ascending aorta
16
2
1
thoracic aorta
16
2
1
pulmonary artery
2
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