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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
ChIP-seq
ATAC-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
907
DNA binding
210
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
204
October, 2019
193
August, 2017
163
June, 2019
115
May, 2019
87
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
29
March, 2020
26
November, 2018
24
July, 2019
15
October, 2017
10
April, 2020
9
August, 2021
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
4
November, 2020
2
December, 2019
2
February, 2023
1
August, 2022
1
March, 2019
1
May, 2021
1
May, 2022
1
November, 2019
Available data
920
bam
812
bigWig
776
bed narrowPeak
558
bigBed narrowPeak
245
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
85
txt
25
bed bedMethyl
25
bigBed bedMethyl
25
tsv
11
hic
10
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
1281
Homo sapiens
Biosample type
1290
tissue
518
cell line
452
primary cell
212
in vitro differentiated cells
8
stem cell
Organ
240
brain
166
liver
165
heart
152
pancreas
109
kidney
107
limb
84
bone element
84
connective tissue
83
adipose tissue
82
blood vessel
82
vasculature
74
musculature of body
37
nerve
32
artery
24
spleen
18
ureter
11
lung
9
eye
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
1267
AMP
13
T1D
10
LungMap
Genome assembly (visualization)
783
GRCh38
715
hg19
Lab
1216
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
11
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
7
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Struan F.A. Grant, CHOP
assay_slims!
Transcription
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
1290 results
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Clear Filters
ChIP-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
liver
145
2
3
1
1
1
islet of Langerhans
71
1
7
4
3
1
1
4
bone element
84
kidney
27
13
6
1
1
1
heart left ventricle
35
3
4
1
1
1
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