Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1105
ChIP-seq
297
ATAC-seq
179
DNase-seq
87
RNA microarray
30
pCHi-C
28
snATAC-seq
27
WGBS
20
Hi-C
11
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
1105
DNA binding
508
DNA accessibility
38
DNA methylation
20
3D chromatin structure
Target of assay
740
histone modification
739
histone
379
narrow histone mark
359
broad histone mark
224
control
143
transcription factor
39
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
263
August, 2017
226
October, 2019
163
June, 2019
115
May, 2019
104
August, 2021
99
February, 2021
91
December, 2017
90
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
49
May, 2021
40
May, 2024
39
May, 2022
37
March, 2020
30
July, 2019
26
November, 2018
26
November, 2019
24
February, 2018
23
October, 2017
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
January, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
1
August, 2018
1
August, 2022
Available data
1148
bam
1112
bed narrowPeak
982
bigWig
578
bigBed narrowPeak
400
fastq
278
tagAlign
228
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
85
txt
64
xls
28
tsv
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
4
bed bedgraph
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
1790
Homo sapiens
Biosample type
1550
tissue
652
primary cell
547
cell line
249
in vitro differentiated cells
8
stem cell
Organ
244
brain
217
pancreas
204
heart
202
liver
184
kidney
174
connective tissue
120
blood vessel
120
vasculature
115
limb
96
bone element
90
adipose tissue
75
musculature of body
69
artery
38
nerve
37
eye
35
epithelium
25
spleen
23
embryo
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1765
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
1079
GRCh38
1000
hg19
4
hg18
Lab
1554
AMP-T2D consortium
82
Katalin Susztak, Upenn
82
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
Struan F.A. Grant, CHOP
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
113
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
32
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
lab.title!
Struan F.A. Grant, CHOP
assay_slims!
Transcription
BIOSAMPLE
ASSAY
1799 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
RRBS
FAIRE-seq
GRO-seq
MeRIP-seq
snDrop-seq
tissue
liver
145
20
2
1
3
1
1
islet of Langerhans
71
68
1
4
7
3
1
1
4
kidney
27
75
13
6
1
1
1
bone element
84
heart left ventricle
35
2
3
1
4
1
1
+ See 158 more…
in vitro differentiated cells
adipocyte
67
7
1
embryonic stem cell
40
5
1
neural progenitor cell
21
10
pancreatic endoderm
18
1
hepatocyte
15
+ See 16 more…
See all biosamples
Download