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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
ChIP-seq
260
ATAC-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
Transcription
907
DNA binding
470
DNA accessibility
16
3D chromatin structure
13
DNA methylation
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
220
October, 2019
190
August, 2017
163
June, 2019
115
May, 2019
95
February, 2021
82
November, 2017
81
February, 2023
80
April, 2019
74
October, 2018
73
August, 2021
50
May, 2020
48
December, 2017
40
May, 2024
39
May, 2022
31
March, 2020
23
October, 2017
21
November, 2019
20
November, 2018
16
July, 2019
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
984
bam
984
bed narrowPeak
855
bigWig
561
bigBed narrowPeak
274
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
85
txt
64
xls
26
tsv
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1516
Homo sapiens
Biosample type
1525
tissue
642
primary cell
546
cell line
249
in vitro differentiated cells
8
stem cell
Organ
243
brain
208
pancreas
197
heart
186
liver
183
kidney
119
blood vessel
119
vasculature
114
limb
96
bone element
88
connective tissue
87
adipose tissue
72
musculature of body
69
artery
38
nerve
37
eye
23
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1491
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
925
GRCh38
828
hg19
Lab
1322
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Struan F.A. Grant, CHOP
assay_slims!
Transcription
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
1525 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RRBS
tissue
liver
145
20
2
1
1
3
islet of Langerhans
71
68
1
7
4
3
1
4
kidney
27
75
13
6
1
1
bone element
84
heart left ventricle
35
2
3
1
1
2
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