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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ATAC-seq
22
total RNA-seq
20
pCHi-C
7
Hi-C
2
ChIP-seq
2
snATAC-seq
1
single cell RNA-seq
Assay category
83
DNA accessibility
23
Transcription
7
3D chromatin structure
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
65
bed narrowPeak
32
tsv
11
bigWig
9
bam
7
bedpe bed3+
7
hic
5
bed bed3
4
txt
Organism
135
Homo sapiens
Biosample type
135
tissue
89
primary cell
21
in vitro differentiated cells
17
cell line
4
stem cell
Organ
43
heart
38
blood vessel
38
vasculature
35
artery
31
eye
27
pancreas
14
epithelium
8
bone element
8
skeleton
5
musculature of body
3
brain
3
liver
2
adipose tissue
2
connective tissue
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
113
AMP
22
T1D
Genome assembly (visualization)
51
hg19
44
GRCh38
Lab
117
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
135 results
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Clear Filters
ATAC-seq
total RNA-seq
pCHi-C
Hi-C
ChIP-seq
snATAC-seq
single cell RNA-seq
tissue
coronary artery
35
islet of Langerhans
13
7
2
2
retina
15
2
pigmented layer of retina
12
2
psoas muscle
2
1
2
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