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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
total RNA-seq
117
ChIP-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
291
Transcription
117
DNA binding
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
73
histone
73
histone modification
41
broad histone mark
32
narrow histone mark
29
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
145
August, 2017
120
July, 2018
51
October, 2018
37
May, 2021
20
November, 2019
7
March, 2020
6
April, 2018
6
July, 2019
6
May, 2022
6
September, 2017
5
February, 2023
4
November, 2018
4
November, 2020
2
August, 2021
2
May, 2019
1
February, 2020
1
March, 2019
Available data
378
bam
357
bigWig
274
tsv
184
fastq
73
bed narrowPeak
53
bigBed narrowPeak
21
bed bed3+
16
tagAlign
12
bed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
416
Homo sapiens
Biosample type
423
tissue
275
primary cell
72
cell line
3
in vitro differentiated cells
Organ
539
connective tissue
480
adipose tissue
423
pancreas
336
liver
247
heart
233
brain
149
kidney
146
bone element
90
blood vessel
90
vasculature
78
limb
48
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
414
AMP
9
T1D
Genome assembly (visualization)
360
hg19
353
GRCh38
Lab
404
AMP-T2D consortium
12
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
lab.title!
Struan F.A. Grant, CHOP
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
423 results
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Clear Filters
total RNA-seq
ChIP-seq
Hi-C
MeRIP-seq
WGBS
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
284
50
3
4
1
body of pancreas
3
35
2
2
pancreas
2
16
1
2
1
1
endocrine pancreas
16
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