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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
4
ChIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
Transcription
29
DNA accessibility
4
DNA binding
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
18
February, 2023
18
May, 2021
16
January, 2021
3
March, 2020
Available data
88
bam
88
bed narrowPeak
88
bigWig
tagAlign
Organism
55
Homo sapiens
Biosample type
24
primary cell
24
tissue
7
cell line
Organ
25
pancreas
8
blood
8
bodily fluid
2
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
2395
AMP
147
HPAP
55
T1D
10
LungMap
1
ITG
Genome assembly (visualization)
4
GRCh38
4
hg19
Lab
51
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
lab.title!
Struan F.A. Grant, CHOP
files.file_type!
tagAlign
assay_slims!
Transcription
BIOSAMPLE
ASSAY
55 results
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snATAC-seq
pCHi-C
ATAC-seq
ChIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
tissue
islet of Langerhans
6
11
2
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
See all biosamples
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