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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
Transcription
65
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
25
histone
25
histone modification
23
control
17
transcription factor
16
broad histone mark
9
narrow histone mark
5
RNA binding protein
Date released
49
August, 2017
23
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
44
bam
44
fastq
27
bigWig
13
bed narrowPeak
10
bigBed narrowPeak
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tsv
Organism
81
Homo sapiens
Biosample type
81
tissue
1
in vitro differentiated cells
Organ
512
liver
448
pancreas
316
epithelium
229
kidney
221
heart
177
connective tissue
163
vasculature
157
blood vessel
144
brain
115
limb
97
bone element
82
adipose tissue
77
artery
72
musculature of body
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
82
AMP
Genome assembly (visualization)
26
hg19
25
GRCh38
Lab
82
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
lab.title!
Struan F.A. Grant, CHOP
files.file_type!
tagAlign
assay_slims!
Transcription
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
28
3
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
adipose tissue
2
3
3
1
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in vitro differentiated cells
white fat cell
1
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