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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
32
DNase-seq
4
ATAC-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
100
DNA binding
37
DNA accessibility
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
88
histone
88
histone modification
63
narrow histone mark
25
broad histone mark
9
control
3
RNA binding protein
3
transcription factor
Date released
47
October, 2019
30
June, 2019
28
May, 2019
25
November, 2017
7
July, 2019
2
March, 2020
2
November, 2018
2
October, 2017
1
February, 2023
Available data
231
bam
210
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3
1
tagAlign bed3+
Organism
144
Homo sapiens
Biosample type
126
tissue
18
primary cell
Organ
512
liver
448
pancreas
316
epithelium
229
kidney
221
heart
177
connective tissue
163
vasculature
157
blood vessel
144
brain
115
limb
97
bone element
82
adipose tissue
77
artery
72
musculature of body
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
144
AMP
Genome assembly (visualization)
123
GRCh38
109
hg19
Lab
144
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
lab.title!
Struan F.A. Grant, CHOP
files.file_type!
tagAlign
assay_slims!
Transcription
BIOSAMPLE
ASSAY
144 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
6
14
1
1
temporal lobe
15
angular gyrus
13
layer of hippocampus
8
middle frontal area 46
6
+ See 51 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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