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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
554
ChIP-seq
177
DNase-seq
64
ATAC-seq
17
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
923
Transcription
554
DNA binding
245
DNA accessibility
17
DNA methylation
Target of assay
342
histone modification
341
histone
182
broad histone mark
159
narrow histone mark
123
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
163
August, 2017
163
June, 2019
143
May, 2020
137
October, 2019
116
July, 2018
115
May, 2019
79
April, 2019
74
October, 2018
64
July, 2019
48
December, 2017
39
November, 2019
38
May, 2021
26
November, 2018
24
May, 2022
14
November, 2017
9
March, 2020
8
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1907
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1739
Homo sapiens
Biosample type
1739
tissue
562
cell line
509
primary cell
265
in vitro differentiated cells
3
stem cell
Organ
498
connective tissue
440
adipose tissue
422
pancreas
238
liver
132
heart
126
brain
114
limb
98
kidney
87
blood vessel
87
vasculature
66
bone element
44
musculature of body
42
nerve
34
artery
24
spleen
18
ureter
8
skeleton
3
eye
Project
1737
AMP
2
T1D
Genome assembly (visualization)
1587
GRCh38
1564
hg19
Lab
1714
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
lab.title!
Struan F.A. Grant, CHOP
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
1739 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
266
30
1
38
6
1
liver
147
72
2
1
bone tissue
58
body of pancreas
2
35
4
4
2
2
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