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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
426
ATAC-seq
200
DNase-seq
36
snATAC-seq
3
FAIRE-seq
Assay category
1496
Transcription
1014
DNA binding
665
DNA accessibility
35
DNA methylation
30
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
102
February, 2023
100
May, 2020
80
August, 2021
34
May, 2021
33
October, 2019
26
November, 2019
22
February, 2021
21
May, 2022
16
January, 2021
11
May, 2023
10
April, 2020
8
July, 2019
4
March, 2020
3
January, 2018
3
March, 2019
2
August, 2017
2
November, 2020
1
August, 2022
Available data
488
bed narrowPeak
389
bam
335
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
fastq
64
xls
14
tsv
12
bed bed3
4
bed bedgraph
1
tar
1
txt
Organism
664
Homo sapiens
Biosample type
429
tissue
168
primary cell
37
in vitro differentiated cells
31
cell line
Organ
163
kidney
77
heart
73
pancreas
58
vasculature
56
blood vessel
52
epithelium
49
artery
44
limb
35
musculature of body
34
brain
32
eye
28
connective tissue
25
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
5
adipose tissue
3
nerve
3
vein
1
pituitary gland
1
skin of body
Project
626
AMP
29
T1D
10
LungMap
Genome assembly (visualization)
388
GRCh38
385
hg19
Lab
517
AMP-T2D consortium
81
Katalin Susztak, Upenn
Klaus Kaestner, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
45
inconsistent ontology term
2
audit script error
1
inconsistent replicate
lab.title!
Struan F.A. Grant, CHOP
Klaus Kaestner, Upenn
files.file_type!
fastq
BIOSAMPLE
ASSAY
665 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
48
7
coronary artery
36
2
liver
20
heart
18
+ See 58 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
peripheral blood mononuclear cell
8
+ See 53 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
7
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
embryonic stem cell
5
+ See 4 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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