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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
1
ATAC-seq
Assay category
35
DNA binding
1
DNA accessibility
Target of assay
23
histone
23
histone modification
13
broad histone mark
12
transcription factor
10
narrow histone mark
1
RNA binding protein
Date released
20
August, 2017
15
November, 2017
1
March, 2019
Available data
341
bam
219
fastq
182
tsv
158
txt
150
tagAlign
147
bed narrowPeak
140
bigWig
40
bigBed narrowPeak
36
bed broadPeak
19
bedpe bed3+
17
hic
14
bigBed broadPeak
10
bed bed3
9
bed bedMethyl
9
bigBed bedMethyl
6
bed bed3+
6
csv
4
bed bedgraph
3
tar
2
ibed
1
bedpe
1
vcf
Organism
36
Homo sapiens
Biosample type
22
tissue
14
cell line
primary cell
Organ
14
liver
13
musculature of body
7
pancreas
1
adipose tissue
1
brain
1
connective tissue
Project
36
AMP
Genome assembly (visualization)
256
hg19
GRCh38
Lab
35
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
2
inconsistent control read length
lab.title!
Struan F.A. Grant, CHOP
month_released!
February, 2018
biosample_type!
primary cell
assembly!
GRCh38
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
ATAC-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
1
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
cell line
HepG2
14
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