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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
single cell RNA-seq
78
total RNA-seq
75
ATAC-seq
43
ChIP-seq
16
snATAC-seq
10
MeRIP-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
DNase-seq
1
RNA microarray
1
whole genome sequencing assay
Assay category
193
Transcription
92
DNA accessibility
43
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
17
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
5
nucleotide modification
1
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
315
August, 2021
314
October, 2019
218
June, 2019
202
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
127
tsv
106
bed narrowPeak
64
xls
57
txt
55
bam
50
bigWig
24
tagAlign
4
bed bed3+
2
bedpe bed3+
2
hic
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
vcf
Organism
348
Homo sapiens
Biosample type
252
tissue
50
cell line
38
in vitro differentiated cells
10
primary cell
Organ
130
kidney
92
heart
35
liver
19
lung
14
pancreas
12
epithelium
8
embryo
7
connective tissue
6
blood vessel
6
vasculature
2
artery
1
adipose tissue
Project
331
AMP
19
LungMap
Genome assembly (visualization)
111
GRCh38
62
hg19
Lab
157
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Struan F.A. Grant, CHOP
Audit category:
9
inconsistent ontology term
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
350 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
MeRIP-seq
STARR-seq
Hi-C
Capture-C
DNase-seq
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
64
6
1
lung
9
10
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 12 more…
cell line
HepG2
9
18
2
1
1
EndoC_BH1
6
2
H1-hESC
8
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
10
21
primary cell
osteoblast
4
1
1
hepatocyte
4
See all biosamples
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