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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
107
single cell RNA-seq
74
ATAC-seq
74
total RNA-seq
9
DNase-seq
7
WGBS
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
FAIRE-seq
1
RNA microarray
1
whole genome sequencing assay
Assay category
181
Transcription
113
DNA binding
90
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
75
transcription factor
22
RNA binding protein
20
histone
20
histone modification
18
control
16
recombinant protein
11
narrow histone mark
9
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
315
August, 2021
314
October, 2019
218
June, 2019
202
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
177
bed narrowPeak
136
bam
125
bigWig
123
tsv
88
fastq
73
bigBed narrowPeak
64
xls
57
txt
24
tagAlign
12
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
1
vcf
Organism
402
Homo sapiens
Biosample type
255
tissue
105
cell line
38
in vitro differentiated cells
5
primary cell
Organ
130
kidney
92
heart
88
liver
15
blood
15
bodily fluid
11
pancreas
9
spleen
8
embryo
6
blood vessel
6
epithelium
6
vasculature
2
adipose tissue
2
artery
2
brain
2
connective tissue
Project
403
AMP
Genome assembly (visualization)
184
GRCh38
127
hg19
Lab
239
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
403 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
snATAC-seq
STARR-seq
Hi-C
Capture-C
FAIRE-seq
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 18 more…
cell line
HepG2
63
9
1
2
1
1
GM12878
15
H1-hESC
8
EndoC_BH1
2
HEK293T
2
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
21
10
7
primary cell
hepatocyte
4
pancreatic cell
1
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