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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
22
total RNA-seq
16
ATAC-seq
4
DNase-seq
4
pCHi-C
1
Hi-C
Assay category
269
DNA binding
22
Transcription
20
DNA accessibility
1
3D chromatin structure
Target of assay
198
histone
198
histone modification
140
narrow histone mark
58
broad histone mark
56
control
15
transcription factor
11
RNA binding protein
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
260
bam
205
bigWig
196
bed narrowPeak
92
bigBed narrowPeak
58
fastq
49
tagAlign
8
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
316
Homo sapiens
Biosample type
316
tissue
36
primary cell
30
cell line
8
in vitro differentiated cells
Organ
86
brain
69
limb
54
pancreas
42
nerve
26
artery
26
blood vessel
26
vasculature
25
connective tissue
24
adipose tissue
21
eye
8
heart
6
liver
4
gonad
4
kidney
4
ovary
2
pituitary gland
1
lymph node
1
skin of body
Project
316
AMP
Genome assembly (visualization)
208
hg19
206
GRCh38
Lab
316
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent control read length
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
316 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
Hi-C
tissue
islet of Langerhans
21
14
13
4
tibial nerve
35
4
1
2
body of pancreas
33
tibial artery
23
1
2
endocrine pancreas
16
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