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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
DNase-seq
4
ChIP-seq
Assay category
9
DNA accessibility
4
DNA binding
Target of assay
3
histone
3
histone modification
2
broad histone mark
1
RNA binding protein
1
narrow histone mark
1
transcription factor
Date released
6
October, 2019
5
June, 2019
2
November, 2017
Available data
180
bam
150
bigWig
129
bed narrowPeak
79
bigBed narrowPeak
68
tsv
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
13
Homo sapiens
Biosample type
8
primary cell
5
tissue
Organ
78
kidney
52
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
9
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
13
AMP
Genome assembly (visualization)
12
hg19
11
GRCh38
Lab
13
AMP-T2D consortium
lab.title!
Struan F.A. Grant, CHOP
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
13 results
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DNase-seq
ChIP-seq
primary cell
endothelial cell of umbilical vein
2
2
brain microvascular endothelial cell
1
2
kidney capillary endothelial cell
1
tissue
coronary artery
2
tibial artery
2
ascending aorta
1
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