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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
5
ChIP-seq
5
pCHi-C
4
DNase-seq
RRBS
Assay category
32
DNA accessibility
19
Transcription
5
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
21
October, 2019
7
June, 2019
1
February, 2020
1
March, 2020
Available data
33
bed narrowPeak
7
bam
6
bigBed narrowPeak
6
bigWig
6
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
61
Homo sapiens
Biosample type
57
tissue
4
primary cell
Organ
944
pancreas
789
liver
679
connective tissue
518
epithelium
491
adipose tissue
391
heart
350
kidney
284
brain
235
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
61
AMP
Genome assembly (visualization)
33
hg19
6
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
lab.title!
Struan F.A. Grant, CHOP
assay_title!
RRBS
BIOSAMPLE
ASSAY
61 results
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ATAC-seq
total RNA-seq
ChIP-seq
pCHi-C
DNase-seq
tissue
islet of Langerhans
1
14
2
4
retina
15
3
3
pigmented layer of retina
12
2
bladder (urinary bladder)
1
primary cell
retinal pigment epithelial cell
3
1
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