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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
Assay category
24
DNA binding
Target of assay
938
histone modification
937
histone
480
narrow histone mark
457
broad histone mark
423
transcription factor
302
control
94
RNA binding protein
89
recombinant protein
24
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
15
November, 2017
5
November, 2018
3
December, 2017
1
August, 2017
Available data
24
bam
24
bed narrowPeak
24
bigBed narrowPeak
24
bigWig
24
fastq
5
bed broadPeak
5
bigBed broadPeak
Organism
24
Homo sapiens
Biosample type
20
cell line
2
tissue
1
in vitro differentiated cells
1
primary cell
Organ
23
liver
10
blood
bodily fluid
connective tissue
1
epithelium
Project
24
AMP
Genome assembly (visualization)
24
hg19
22
GRCh38
Lab
24
AMP-T2D consortium
Audit category:
2
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
8
inconsistent control run_type
lab.title!
Struan F.A. Grant, CHOP
organ_slims!
bodily fluid
connective tissue
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
cell line
HepG2
20
tissue
liver
2
in vitro differentiated cells
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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