Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
ChIP-seq
165
single cell RNA-seq
135
total RNA-seq
87
RNA microarray
27
WGBS
25
pCHi-C
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
378
DNA binding
300
Transcription
DNA accessibility
29
DNA methylation
5
3D chromatin structure
Target of assay
190
histone
190
histone modification
184
control
105
broad histone mark
85
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
158
August, 2021
103
August, 2017
93
February, 2021
76
November, 2017
66
October, 2019
47
September, 2023
40
May, 2024
29
October, 2018
27
May, 2022
25
February, 2020
23
May, 2020
22
March, 2020
22
May, 2019
16
July, 2019
15
April, 2019
14
February, 2023
12
December, 2017
9
November, 2018
9
October, 2017
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
May, 2023
2
May, 2021
1
January, 2019
Available data
240
bam
158
tsv
156
txt
133
tagAlign
107
bigWig
92
bed narrowPeak
81
fastq
52
bigBed narrowPeak
16
bed bedMethyl
16
bigBed bedMethyl
6
csv
1
bedpe bed3+
Organism
829
Homo sapiens
Biosample type
831
tissue
279
primary cell
116
cell line
97
in vitro differentiated cells
7
stem cell
Organ
163
heart
125
kidney
109
brain
92
liver
88
bone element
65
connective tissue
64
adipose tissue
63
pancreas
28
blood vessel
28
vasculature
26
limb
25
eye
21
musculature of body
12
nerve
11
artery
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
776
AMP
47
KPMP
8
T1D
Genome assembly (visualization)
1524
GRCh38
hg19
Lab
645
AMP-T2D consortium
60
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
87
inconsistent ontology term
7
audit script error
Audit category:
1
missing controlled_by
lab.title!
Xin Sun, UCSD
assay_slims!
DNA accessibility
assembly!
hg19
BIOSAMPLE
ASSAY
831 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
WGBS
pCHi-C
Hi-C
MeRIP-seq
snDrop-seq
RRBS
tissue
kidney
7
64
49
liver
62
1
20
3
1
bone element
84
islet of Langerhans
40
32
4
1
4
left cardiac atrium
40
18
+ See 81 more…
See all biosamples
Download