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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
Assay category
DNA accessibility
101
DNA binding
Target of assay
54
histone
54
histone modification
47
transcription factor
30
broad histone mark
24
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
57
November, 2017
39
August, 2017
3
October, 2017
2
October, 2019
Available data
2947
bam
2763
bigWig
1586
tsv
1271
bed narrowPeak
1200
fastq
770
bigBed narrowPeak
387
tagAlign
157
txt
101
bed broadPeak
93
zippedFastqFolder
66
bigBed broadPeak
54
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
95
Homo sapiens
Biosample type
45
cell line
35
tissue
21
primary cell
Organ
45
liver
15
brain
13
musculature of body
12
pancreas
6
epithelium
6
vasculature
4
blood vessel
2
vein
1
adipose tissue
1
connective tissue
Project
101
AMP
Genome assembly (visualization)
101
hg19
65
GRCh38
Lab
101
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
lab.title!
Xin Sun, UCSD
assay_slims!
DNA accessibility
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
101 results
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ChIP-seq
cell line
HepG2
45
tissue
skeletal muscle tissue
13
islet of Langerhans
6
pancreas
6
brain
3
cingulate gyrus
2
+ See 4 more…
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
See all biosamples
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