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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
132
single cell RNA-seq
88
ChIP-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
333
Transcription
DNA accessibility
88
DNA binding
47
DNA methylation
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
86
February, 2023
74
May, 2022
56
September, 2020
47
September, 2023
45
May, 2020
18
February, 2021
7
March, 2020
5
March, 2023
3
October, 2022
Available data
186
bam
186
bigWig
132
fastq
104
tsv
93
zippedFastqFolder
88
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
490
Homo sapiens
Biosample type
424
primary cell
57
tissue
11
cell line
2
stem cell
Organ
116
pancreas
107
epithelium
47
kidney
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
227
HPAP
215
T1D
47
KPMP
4
community
1
ITG
Genome assembly (visualization)
189
hg19
187
GRCh38
Lab
227
Klaus Kaestner, Upenn
207
Kyle Gaulton, UCSD
47
KPMP
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
9
inconsistent ontology term
3
audit script error
lab.title!
Xin Sun, UCSD
assay_slims!
DNA accessibility
award.project!
AMP
BIOSAMPLE
ASSAY
494 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
85
pancreatic alpha cell
42
31
1
exocrine cell
39
pancreatic beta cell
11
16
1
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tissue
kidney
47
islet of Langerhans
7
2
thymus
1
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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