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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
347
single cell RNA-seq
212
DNase-seq
85
RNA microarray
75
WGBS
57
pCHi-C
45
snATAC-seq
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
84
February, 2021
5
January, 2018
1
August, 2021
Available data
84
txt
5
bigWig
5
fastq
Organism
89
Homo sapiens
Biosample type
85
tissue
4
in vitro differentiated cells
1
stem cell
Organ
84
bone element
1
adipose tissue
1
connective tissue
1
embryo
Project
90
AMP
Genome assembly (visualization)
5
hg18
Lab
90
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
audit script error
lab.title!
Xin Sun, UCSD
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
90 results
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Clear Filters
RNA microarray
GRO-seq
tissue
bone element
84
subcutaneous adipose tissue
1
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
stem cell
hESC
1
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