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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
347
single cell RNA-seq
212
DNase-seq
85
RNA microarray
75
WGBS
57
pCHi-C
45
snATAC-seq
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
75
DNA methylation
45
DNA accessibility
Date released
62
May, 2022
16
January, 2021
12
July, 2019
9
August, 2017
7
November, 2018
6
August, 2021
6
February, 2021
2
February, 2023
Available data
62
zippedFastqFolder
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
17
fastq
6
tsv
Organism
120
Homo sapiens
Biosample type
76
primary cell
43
tissue
1
cell line
Organ
61
pancreas
47
epithelium
8
blood
8
bodily fluid
8
heart
6
adipose tissue
6
connective tissue
6
kidney
5
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
68
HPAP
34
AMP
18
T1D
Genome assembly (visualization)
17
GRCh38
Lab
68
Klaus Kaestner, Upenn
28
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
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Xin Sun, UCSD
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BIOSAMPLE
ASSAY
120 results
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WGBS
snATAC-seq
primary cell
pancreatic alpha cell
31
Langerhans cell
21
pancreatic beta cell
16
peripheral blood mononuclear cell
8
tissue
islet of Langerhans
6
kidney
6
pancreas
2
4
heart left ventricle
4
adipose tissue
3
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cell line
HepG2
1
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