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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
187
single cell RNA-seq
161
ATAC-seq
53
ChIP-seq
47
WGBS
29
snATAC-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
192
DNA accessibility
58
DNA methylation
53
DNA binding
6
3D chromatin structure
Target of assay
35
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
147
May, 2020
134
May, 2022
88
February, 2023
79
May, 2021
59
September, 2020
48
July, 2018
43
April, 2018
31
July, 2019
27
September, 2018
26
August, 2017
20
February, 2021
12
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
613
bigWig
609
bam
382
fastq
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
762
Homo sapiens
Biosample type
1765
tissue
762
primary cell
260
in vitro differentiated cells
258
cell line
8
stem cell
Organ
296
epithelium
275
pancreas
22
connective tissue
15
vasculature
14
kidney
13
blood vessel
10
brain
8
blood
8
bodily fluid
8
liver
8
vein
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
347
AMP
294
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
336
hg19
275
GRCh38
Lab
342
AMP-T2D consortium
294
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
audit script error
29
inconsistent ontology term
Audit category:
12
missing controlled_by
lab.title!
Xin Sun, UCSD
audit.ERROR.category!
audit script error
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
762 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
snATAC-seq
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
12
29
6
31
Langerhans cell
85
21
pancreatic beta cell
21
12
16
6
16
monocyte
54
2
1
1
1
exocrine cell
39
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